BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB033E09SP1|AL429760
(845 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig469 975 0.0
3x_Contig720 554 e-157
>3x_Contig469
Length = 1772
Score = 975 bits (491), Expect = 0.0
Identities = 513/517 (99%), Gaps = 3/517 (0%)
Strand = Plus / Plus
Query: 332 agatcgtcttgaattgttactacgtg-gcttcaagaagagatacccaactctacaaaac- 389
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 18 agatcgtcttgaattgttactacgtgagcttcaagaagagatacccaactctacaaaaca 77
Query: 390 cgtaaacaaactt-tgcaatatttgggtgacaaattccgtgttgtattccaagcctctcc 448
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 cgtaaacaaacttatgcaatatttgggtgacaaattccgtgttgtattccaagcctctcc 137
Query: 449 cgatatgaccgakctgcaagtcggccaggaacttttaaaccgtattgttttagttcacct 508
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 cgatatgaccgatctgcaagtcggccaggaacttttaaaccgtattgttttagttcacct 197
Query: 509 tggtgaaaacaacaaagacaaattcaacatgctattattcatgatcagaaaactctattc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tggtgaaaacaacaaagacaaattcaacatgctattattcatgatcagaaaactctattc 257
Query: 569 gttggttgctggtgaatgttccccagataatcctgatgcagctcaacatcaagaaattct 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gttggttgctggtgaatgttccccagataatcctgatgcagctcaacatcaagaaattct 317
Query: 629 attaggtgggttcttgtatggtatgattgtcaaggaaaaaattgaagaatacctacaaaa 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 attaggtgggttcttgtatggtatgattgtcaaggaaaaaattgaagaatacctacaaaa 377
Query: 689 catcaggttacaaattcaaacagacataaatcgtgggttagctatcaactttaaggatca 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 catcaggttacaaattcaaacagacataaatcgtgggttagctatcaactttaaggatca 437
Query: 749 aaaatatatgaacaaggtgcttatgagagtcaatgaaaacattgggtcaaaattacagta 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaaatatatgaacaaggtgcttatgagagtcaatgaaaacattgggtcaaaattacagta 497
Query: 809 tttcttatctactggtaatttggtttctcaatctggt 845
|||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttcttatctactggtaatttggtttctcaatctggt 534
>3x_Contig720
Length = 2178
Score = 554 bits (279), Expect = e-157
Identities = 295/300 (98%), Gaps = 1/300 (0%)
Strand = Plus / Minus
Query: 1 tacttcattgttaatggtatcgaaaaattgatcagaatgttaattgtgcam-gtagaaac 59
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 300 tacttcattgttaatggtatcgaaaaattgatcagaatgttaattgtgcaacgtagaaac 241
Query: 60 catccaatggctatcattagaccttcatttgctaacagaggtgcctcctactcccaatat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 catccaatggctatcattagaccttcatttgctaacagaggtgcctcctactcccaatat 181
Query: 120 ggtattcagattagatccgttagaccagatcaaacatctcaaactaacgtcttgcattat 179
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 180 ggtattcagattagatccgttagaccagatcaaacatctcanactaacgtcttgcattat 121
Query: 180 ttaaacgatggtcaagttaccttcaggttctcttggaggaaaaatgaatatttaattcca 239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 120 ttaaacgatggtcaagttaccttcaagttctcttggaggaaaaatgaatatttaattcca 61
Query: 240 gtggtaatgatcttaagagcactatgcgataccaatgatagagagatttttgatcacgtt 299
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 60 gtggtaatgatcttaagagcactatgcgataccaatgatagagaaatttttgatcacgtt 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7108
Number of Sequences: 1807
Number of extensions: 7108
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 2
length of query: 845
length of database: 10,358,551
effective HSP length: 16
effective length of query: 829
effective length of database: 10,329,639
effective search space: 8563270731
effective search space used: 8563270731
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)